.. _$_02-core-15-integration:

================
Data Integration
================

.. _return-to-top-02-core-15-integration:

This section addresses:

.. rst:role:: USDA #4

   Allow incorporation ARS ontology for ingredients nomenclature with access to external databases.

.. rst:role:: USDA #3

   Provide links to other nutrition-related databases.

Ontomatica Coverage
-------------------

Ontomatica integrates data from projects sponsored by the following :ref:`authorities <terms-Authority>`.

Integration enables Ontomatica to automate the specification of a food description using authority terms familiar to a :ref:`depositor <terms-Depositor>`.

An authority can easily verify that :ref:`components <terms-Component>` |_| of a food description accurately represent their data.

Ontomatica has developed :ref:`web services <terms-Web-Service>` that keep integrated data fresh and accurate.

Authorities
-----------

.. csv-table::
   :header: "Authority", "Project", "Data"
   :widths: 15, 35, 10

   "US NIH", "PubChem", "Chemicals"
   "", "NCI thesaurus", "Food related terms"
   "", "NCBI Taxon", "Living organisms"
   "", "NCBI Structure", "Proteins"
   "", "NCBI Genes", "Human genome"
   "", "NCI Applied Research", "Diet components"
   "US CDC", "What We Eat in America", "Meal groups"
   "", "What We Eat in America", "Food groups"
   "USDA ARS", "IR-4", "Crop groups"
   "", "GRIN", "Living organisms"
   "", "NALT", "Food related terms"
   "", "SR", "Food composition"
   "", "FNDDS", "Meal composition"
   "", "GrainGenes", "Crop characteristics"
   "USDA AMS", "IR-4", "Crop groups"
   "", "Organic specifications", "Label claims"
   "", "Quality & grades", "Label claims"
   "USDA FSIS", "Species", "Label claims"
   "", "Parts of species", "Label claims"
   "", "Quality & Grades; parts of species", "Label claims"
   "", "Hazard analysis critical control points", "HACCP label claims"
   "US FDA", "Food labeling", "Label data & label claims"
   "", "Substance Registration System", "UNII"
   "", "US CFR & ChemIDplus", "CAS identifiers & UNII "
   "US EPA", "Food Commodity Intake Data", "FCID identity"
   "", "IR-4", "Crop groups"
   "US DOC", "North America Industrial Classification", "NAICS codes"
   "US ITC", "Harmonized Tariff & Trade", "Tariff codes"
   "European Union", "Food & environment regulations", "EU legislation codes"
   "UN FAO", "CODEX crops", "Identity of commodities"
   "", "INFOODS", "Identity of chemicals & methods"
   "", "AgroVoc", "Identity of chemicals & commodities"
   "", "Agrontology", "Relationships among food-related items"
   "", "CODEX", "Identity of food additives"
   "ChEBI", "chemicals ", "Identity"
   "ChEMBL", "bioactive components ", "Identity"
   "UniProt", "bioactive components ", "Identity"
   "KEGG", "chemicals ", "Identity"
   "", "bioactive components ", "Identity"

:ref:`Return to top <return-to-top-02-core-15-integration>`

.. |_| unicode:: 0x80